SNP Profiles matching PA 39 [PER]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	AC	GG	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
1._RUQ_1131	TT	CC	AC	GG	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC
2._PA_156_[PER]	_	_	AC	GG	CC	_	AA	CC	AA	CC	_	_	AA	_
3._PA_156_[PER]	_	_	AC	GG	CC	_	AA	CC	AA	CC	_	_	AA	_
4._PA_156_[PER]	_	_	AC	GG	CC	_	AA	CC	AA	CC	_	_	AA	_
5._PA_156_[PER]	_	_	AC	GG	CC	_	AA	CC	AA	CC	_	_	AA	_
6._RUQ_1531	_	_	AC	GG	CC	_	AA	CC	AA	CC	_	_	AA	_
7._PA_156_[PER]	_	_	AC	GG	CC	_	AA	CC	AA	CC	_	_	AA	_
8._PA_186_[PER]	_	_	AC	GG	CC	_	AA	CC	AA	CC	_	_	AA	_
9._PA_156_[PER]	_	_	AC	GG	_	_	AA	CC	AA	CC	_	_	AA	_
10._PA_156_[PER]	_	_	AC	GG	CC	_	AA	_	AA	CC	_	_	AA	_
11._GC-08-051-1-62	TT	CC	AC	GT	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
12._GC-08-051-1-62	TT	CC	AC	GT	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
13._GC-08-051-1-62	TT	CC	AC	GT	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
14._GC-08-051-1-62	TT	CC	AC	GT	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
15._GC-08-051-1-62	TT	CC	AC	GT	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
16._GC-08-051-1-62	TT	CC	AC	GT	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
17._GC-08-051-1-62	TT	CC	AC	GT	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
18._GC-08-051-1-62	TT	CC	AC	GT	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
19._GC-08-051-1-62	TT	CC	AC	GT	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
20._GC-08-051-1-62	TT	CC	AC	GT	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
21._PA_105_[PER]	_	_	AA	GG	CT	_	AA	-	AA	CC	_	_	AA	_
22._RUQ_1531	TT	CC	AC	GG	CC	GG	AA	CC	AA	CC	GG	GG	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	CT	TT	CG	AC	CT	TT	CC	GG	AG	TT	AA	GG
1._RUQ_1131	AA	CC	TT	GT	CC	AC	CT	TT	CC	GG	GG	TT	AA	GG
2._PA_156_[PER]	AA	AC	CC	TT	CG	CC	_	TT	_	GG	_	_	_	GG
3._PA_156_[PER]	AA	AC	CC	TT	CG	CC	_	TT	_	GG	_	_	_	GG
4._PA_156_[PER]	AA	AC	CC	TT	CG	CC	_	TT	_	GG	_	_	_	GG
5._PA_156_[PER]	AA	AC	CC	TT	CG	CC	_	TT	_	GG	_	_	_	GG
6._RUQ_1531	AA	AC	CC	TT	CG	CC	_	TT	_	GG	_	_	_	GG
7._PA_156_[PER]	AA	AC	CC	TT	CG	CC	_	TT	_	GG	_	_	_	GG
8._PA_186_[PER]	AA	AC	CC	TT	CG	CC	_	TT	_	-	_	_	_	GG
9._PA_156_[PER]	AA	AC	CC	TT	CG	CC	_	TT	_	GG	_	_	_	GG
10._PA_156_[PER]	AA	AC	CC	TT	CG	CC	_	TT	_	GG	_	_	_	GG
11._GC-08-051-1-62	AA	AC	CT	GT	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
12._GC-08-051-1-62	AA	AC	CT	GT	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
13._GC-08-051-1-62	AA	AC	CT	GT	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
14._GC-08-051-1-62	AA	AC	CT	GT	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
15._GC-08-051-1-62	AA	AC	CT	GT	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
16._GC-08-051-1-62	AA	AC	CT	GT	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
17._GC-08-051-1-62	AA	AC	CT	GT	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
18._GC-08-051-1-62	AA	AC	CT	GT	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
19._GC-08-051-1-62	AA	AC	CT	GT	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
20._GC-08-051-1-62	AA	AC	CT	GT	CG	CC	TT	TT	CC	GG	AG	TT	AA	GG
21._PA_105_[PER]	AA	CC	CT	TT	CG	CC	_	TT	_	-	_	_	_	GG
22._RUQ_1531	AA	AC	CC	TT	CG	CC	TT	TT	CT	GG	GG	TT	AC	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	AG	CC	CC	GG	GG	TT	TT	CT	CT	CT	GG	AG
1._RUQ_1131	CC	CC	AA	CC	CC	GG	GG	TT	TT	CT	CT	CT	GG	AG
2._PA_156_[PER]	_	CC	AG	_	CC	_	_	_	TT	_	_	CT	GG	AG
3._PA_156_[PER]	_	CC	AG	_	CC	_	_	_	TT	_	_	CT	GG	AG
4._PA_156_[PER]	_	CC	AG	_	CC	_	_	_	TT	_	_	CT	GG	AG
5._PA_156_[PER]	_	CC	AG	_	CC	_	_	_	TT	_	_	CT	GG	AG
6._RUQ_1531	_	CC	AG	_	CC	_	_	_	TT	_	_	CT	GG	AG
7._PA_156_[PER]	_	CC	AG	_	CC	_	_	_	TT	_	_	CT	GG	AG
8._PA_186_[PER]	CC	CC	AG	_	CC	_	_	_	TT	_	_	CT	GG	AG
9._PA_156_[PER]	_	CC	AG	_	CC	_	_	_	TT	_	_	CT	GG	AG
10._PA_156_[PER]	_	CC	AG	_	CC	_	_	_	TT	_	_	CT	GG	AG
11._GC-08-051-1-62	CC	CC	AG	CC	CC	GG	GG	TT	TT	_	CC	CT	GG	AG
12._GC-08-051-1-62	CC	CC	AG	CC	CC	GG	GG	TT	TT	_	CC	CT	GG	AG
13._GC-08-051-1-62	CC	CC	AG	CC	CC	GG	GG	TT	TT	_	CC	CT	GG	AG
14._GC-08-051-1-62	CC	CC	AG	CC	CC	GG	GG	TT	TT	_	CC	CT	GG	AG
15._GC-08-051-1-62	CC	CC	AG	CC	CC	GG	GG	TT	TT	_	CC	CT	GG	AG
16._GC-08-051-1-62	CC	CC	AG	CC	CC	GG	GG	TT	TT	_	CC	CT	GG	AG
17._GC-08-051-1-62	CC	CC	AG	CC	CC	GG	GG	TT	TT	_	CC	CT	GG	AG
18._GC-08-051-1-62	CC	CC	AG	CC	CC	GG	GG	TT	TT	_	CC	CT	GG	AG
19._GC-08-051-1-62	CC	CC	AG	CC	CC	GG	GG	TT	TT	_	CC	CT	GG	AG
20._GC-08-051-1-62	CC	CC	AG	CC	CC	GG	GG	TT	TT	_	CC	CT	GG	AG
21._PA_105_[PER]	CC	CC	AG	_	CC	_	_	_	TT	_	_	CT	GG	GG
22._RUQ_1531	CC	CC	AG	-	CC	GG	GG	TT	TT	TT	CT	CT	GG	AG

Input profile: PA_39_[PER] RUQ_1567

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._PA_136_[PER] RUQ_1131

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._PA_156_[PER]

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 5 > FP

Dapeng Zhang, 2016

3._PA_156_[PER]

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 4 > FP

Dapeng Zhang, 2016

4._PA_156_[PER]

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 3 > FP

Dapeng Zhang, 2016

5._PA_156_[PER]

93.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 2

Dapeng Zhang, 2016

6._PA_156_[PER] RUQ_1531

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

7._PA_156_[PER]

93.8 %
24 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Plot 1 - Row1 C0184 28

Dapeng Zhang, 2016

8._PA_186_[PER]

93.8 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 446

Dapeng Zhang, 2014

9._PA_156_[PER]

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._PA_156_[PER]

93.5 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A D295 T1

Dapeng Zhang, 2016

11._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

12._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

13._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

14._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

15._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

16._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

17._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP3

18._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

19._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

20._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

21._PA_105_[PER]

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A F526 T1

Dapeng Zhang, 2014

22._PA_156_[PER] RUQ_1531

90.2 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484